Keonna Charlize Simon

Keonna Charlize Simon

Scholar Title

MIT HEALS | MIT Health and Life Sciences Collaborative Undergraduate Research and Innovation Scholar

Research Title

Morphology-Aware ML Model for CycIF-Based Cell Typing in the Medulloblastoma Tumor Microenvironment

Cohort

2025–2026

Department

Electrical Engineering and Computer Science

Research Areas
  • Health and Life Sciences
  • AI for Healthcare and Life Sciences
Supervisor

Regina A. Barzilay

Abstract

Imaging medulloblastoma tumors presents several challenges, including tissue autofluorescence, low signal-to-noise ratios, and the complexity of distinguishing immune cells within densely packed tumor regions. Current analysis methods rely largely on signal brightness and frequently confuse true biology with autofluorescence or spectral overlap. My work develops a morphology-aware machine learning model that uses visual structure and texture, rather than brightness alone, to distinguish real marker expression from these artifacts. By improving how cells are identified and classified, my approach seeks to produce more reliable cell typing.

Quote

Through this SuperUROP, I hope to gain hands-on experience applying machine learning and image processing techniques to biological data, which will complement my lab experience in experimental biology. I am eager to enhance my understanding of advanced statistical analyses and imaging pipelines, which will be crucial for my long-term interests in disease research and public health.

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